PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1603s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 363aa    MW: 40969.2 Da    PI: 7.3423
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1603s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-154099155
                     AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                            s y+GV++++++gr++A+++d  s+n    k+ ++++lg ++ +e Aa a++ a++k++g
  SapurV1A.1603s0090.1.p 40 SIYRGVTRHRWTGRYEAHLWDkNSWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 99
                            57*******************888866656446*************************98 PP

2AP250.74.4e-16142193155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  SapurV1A.1603s0090.1.p 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 193
                             89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.36E-1140109No hitNo description
SuperFamilySSF541713.66E-1740109IPR016177DNA-binding domain
PfamPF008478.7E-124099IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1641107IPR001471AP2/ERF domain
SMARTSM003803.1E-2541113IPR001471AP2/ERF domain
PROSITE profilePS5103220.3141107IPR001471AP2/ERF domain
PRINTSPR003675.1E-64253IPR001471AP2/ERF domain
CDDcd000186.04E-23142203No hitNo description
PfamPF008477.8E-12142193IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17142203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17143202IPR001471AP2/ERF domain
SMARTSM003801.3E-24143207IPR001471AP2/ERF domain
PROSITE profilePS5103218.268143201IPR001471AP2/ERF domain
PRINTSPR003675.1E-6183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGKSSKQTLE DSANTSSNPT NKAKRTRKSV PRDSPPRRSS IYRGVTRHRW TGRYEAHLWD  60
KNSWNESQNK KGRQVYLGAY DDEEAAAHAY DLAALKYWGQ DTILNFPWST YEEELKEMEG  120
QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA  180
ATAYDMAAIE YRGINAVTNF DLSRYIKLLR PNINQNNLQL NPNGDANRFQ DLDRKTGLDL  240
IMSHHPSSSV NETEVTDPTR PAGGAASSAL GLLLQSSKFK EILERTSAAN PPLTPPESDR  300
DPPRRSFPDD IQTFFDCQDS SIYTDVDDII FGELNSFASS IFHYELDGQE MVSGTNKSIL  360
TI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020562.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-122AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLU5GNH00.0U5GNH0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.17e-86ARIA-interacting double AP2 domain protein